Subversion Repositories bdplot

## hvad hvis mfrow er NA?  hvad er columns? den kan kun saettes til 1,

## det virker maerkeligt... Er det til artikler, hvor man ofte skriver

## i to spalter? Hvad saa med en "a4.2col" paper?

## What about a beamer mode?

.bdconf.default <- function( columns=1, half=FALSE, quadratic=FALSE)

  {

    ##Global and control parameters

    .BDPars <- list()

    ## This will be put in front of filenames. Set to NA, NULL or "" to omit.

    .BDPars$figdir <- ""

    ## Choose paper size for automatic figure sizing. Only "b5" implemented

    .BDPars$paper <- "a4.word"

    ## This should probably not have a default value different from NA

    .BDPars$file <- NA

    ##

    .BDPars$mfrow <- c(1,1)

    ## Default plotting method, i.e. type of plot. One of

    ## "xy", "histogram", "image.plot", "barplot" and "acf".

    ## This part is likely to be changed in the future.

    ## "xy" is like plot(x), plot(x,y). Don't confuse with xyplot from

    ## lattice.

    .BDPars$method <- "xy"

    ## When plotting in xy mode, this is type in plot(). The possibilities are "n", "o", "l" (at least, see ?plot). for plot(), default is "p". Notice, this is also the default for bdxyadd.

    .BDPars$type <- "p"

    ## Nice to put to something default if you (almost) always use x

    ## and y labels and you want to substitute them with psfrag

    ## anyway.

    ##    .BDPars$xlab <- "longxlabel"

    ##    .BDPars$ylab <- "longylabel"

    ## otherwise we'll stick to the R standard

    .BDPars$xlab <- NULL

    .BDPars$ylab <- NULL

    .BDPars$toplab <- NA

    .BDPars$rightlab <- NA        

    ## You probably don't want a default here. 

    .BDPars$xlim <- NULL

    .BDPars$ylim <- NULL

    ## "s" is the default R axis method

    .BDPars$xaxt <- "s"

    .BDPars$yaxt <- "s"

## these must be implemented differently

    .BDPars$draw.raxis <- FALSE

    .BDPars$draw.taxis <- FALSE

    .BDPars$grid <- FALSE

    .BDPars$grid.lwd <- 0.3

    ## what are these? NA/TRUE/"Def"? 

    .BDPars$grid.h <- NA

    .BDPars$grid.v <- NA

    .BDPars$grid.col <- "grey50"

    ## controls - at least - size of point characters

    .BDPars$cex.plot <- 0.4

    ## See ?par

    .BDPars$cex.main <- .7

    ##

    ## This has no effect on the axis label sizes if they are

    ## substituted with psfrag.

    .BDPars$cex.lab <- .6

    ## font size on the axis indexing

    .BDPars$cex.axis <- .5

    ## line width

    .BDPars$lwd <- 0.5

    ## length of tick marks. positive values put the ticks inside the

    ## plots.

    .BDPars$tcl <- -.2

    ## cex for legends. Legends are not written by pbp. But you

    ## may want to save your default anyway. It's used by bd.legend()

    .BDPars$cex.legend <- .5

    ## a default position

    .BDPars$pos.legend <- "topright"

    ## And a default background color: Is NA transparancy?

    ## This is not a background for the whole frame, it is for shapes.

    .BDPars$bg.legend <- "white"

    ## col controls the color of the plot.

    .BDPars$col <- "black"

    ## box around the plot.

    .BDPars$bty <- "o"

    ## the default plotting character for points

    .BDPars$pch <- 21

### Margins

    ## It may be tempting to omit a top margin or make it very small

    ## when there is no top label. But remember that sometimes numbers

    ## on the x axis exceed the plot region. If you make it very small,

    ## remember to check that for each plot, you may have to do some

    ## exceptions then.

    ##c(bottom, left, top, right)

    .BDPars$mar.nolab <- c(1.5, 1, 0.4, 0.3)

    .BDPars$mar.lab <-  c(2.1, 2.1, 2.1, 2.1)

    ## This one can not be set with commands since it is used in this

    ## function.

    mar.lab.half <- c(2.1, 1.9, 1.9, 1.9)

    ##c(2,  2, 1.5, 1.35)

    ## What exactly do these do?

    ## some control of distances from axis to text?

    ## mgp for axis commands.

    ## Only used if .BDPars$draw.xaxis=TRUE

    ## (?,,)

    .BDPars$mgp.xaxis <- c(1, -.1, 0)

    ## Only used if .BDPars$draw.yaxis=TRUE

    .BDPars$mgp.yaxis <- c(1, 0.15, 0)

    .BDPars$mgp.raxis <- c(1.2, 0.15, 0)

    ## This (only first element?) has effect if axis labels are written

    ## by the plot command. It can also be written by the mtext

    ## command. Only one of these methods should be used in the

    ## future. I think the mtext way is more flexible, but then the

    ## distance should be calculated from the mgp.axis in stead of from

    ## the ?labLine. If not, these use different units which is

    ## confusing.

    ## (plotbox to labs, axis to axislabs,plotbox to axis)

    .BDPars$mgp.global <- c(.8, .15, 0)

    ## Bruges dette?

##    .BDPars$xlabLine <- 0.9

##    .BDPars$ylabLine <- 1.1

### Histograms.

    ## If you really want to play with this, the barplot may be more flexible.

    ## The default color of the bars in a histogram and in barplot. NULL is default for both (white for histogram, grey for barplot). See col in ?histogram.

    .BDPars$hcol <- NULL

    ## Color of the borders of the bars 

    .BDPars$border <- .BDPars$col

    ## A color map. This could be implemented for lattice/trellis plots?

    ## should at least be implemented as standard in image.plot

    ## .BDPars$color.palette <- colorRampPalette(c("#4d2a00","#eee7a7"))

    .BDPars$color.palette <- colorRampPalette(c("#3c1900","#fef7b7")) 

    .BDPars$color.palette2 <- colorRampPalette(c("#3c1900","#ffffff"))

    .BDPars$colpal.heat <- colorRampPalette(c("#ff0000","#0000ff"))

    ## the matlab red-green-blue

    .BDPars$colpal.ml <- colorRampPalette(c("#ff0000","#00ff00","#0000ff"))

  ## white-yellow-red

  ## may be good for the screen, but white and yellow are too close for paper.

  .BDPars$colpal.wyr <- colorRampPalette(c("#ffffff",7,"#ff0000"))

  ## white-green-red

  .BDPars$colpal.wgr <- colorRampPalette(c("#ffffff","#00ff00","#ff0000"))

  ## may be good for the screen, but white and yellow are too close for paper.

  ## you have a favourite?

    .BDPars$colpal <- .BDPars$colpal.wgr

### the first of these is only needed if using jpeg() in bdopen(). But that doesn't work...

    .BDPars$jpeg.quality <- 100

    .BDPars$jpeg.res <- 400

### debugging mode (gives terminal outputs)

    .BDPars$debug <- FALSE

    .BDPars

  }