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204 jakw 1 
function [ output_args ] = alignSubScansMarkers(calibrationFileName, alnFileName, scanDir)
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%ALIGNSUBSCANSMARKERS Determines an exact alignment of sub scans (scans
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% from e.g. one revolution of the rotation stage).
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% The method searches for circular white markers of the specified diameter.
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% White frames corresponding to each sub scan must be available.
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% A coarse alignment in the form of an aln-file must be provided. This is
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% output from the scanner by default based on rotation axis alignment.
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%
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% 2017 Jakob Wilm, DTU
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end
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