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function [ output_args ] = alignSubScansMarkers(calibrationFileName, alnFileName, scanDir)
%ALIGNSUBSCANSMARKERS Determines an exact alignment of sub scans (scans
% from e.g. one revolution of the rotation stage).
% The method searches for circular white markers of the specified diameter.
% White frames corresponding to each sub scan must be available.
% A coarse alignment in the form of an aln-file must be provided. This is
% output from the scanner by default based on rotation axis alignment.
%
% 2017 Jakob Wilm, DTU
end