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function bestFits = ellipseDetection(img, params)

function bestFits = ellipseDetection(img, params)

% ellipseDetection: Ellipse detection

% ellipseDetection: Ellipse detection

%

%

% Overview:

% Overview:

% --------

% --------

% Fits an ellipse by examining all possible major axes (all pairs of points) and

% Fits an ellipse by examining all possible major axes (all pairs of points) and

% getting the minor axis using Hough transform. The algorithm complexity depends on 

% getting the minor axis using Hough transform. The algorithm complexity depends on 

% the number of valid non-zero points, therefore it is beneficial to provide as many 

% the number of valid non-zero points, therefore it is beneficial to provide as many 

% restrictions in the "params" input arguments as possible if there is any prior

% restrictions in the "params" input arguments as possible if there is any prior

% knowledge about the problem.

% knowledge about the problem.

%

%

% The code is reasonably fast due to (optional) randomization and full code vectorization.

% The code is reasonably fast due to (optional) randomization and full code vectorization.

% However, as the algorithm needs to compute pairwise point distances, it can be quite memory

% However, as the algorithm needs to compute pairwise point distances, it can be quite memory

% intensive. If you get out of memory errors, either downsample the input image or somehow 

% intensive. If you get out of memory errors, either downsample the input image or somehow 

% decrease the number of non-zero points in it.

% decrease the number of non-zero points in it.

% It can deal with big amount of noise but can have severe problem with occlusions (major axis

% It can deal with big amount of noise but can have severe problem with occlusions (major axis

% end points need to be visible)

% end points need to be visible)

%

%

% Input arguments:

% Input arguments:

% --------    

% --------    

% img

% img

%   - One-channel input image (greyscale or binary).

%   - One-channel input image (greyscale or binary).

% params

% params

%   - Parameters of the algorithm:

%   - Parameters of the algorithm:

%       minMajorAxis: Minimal length of major axis accepted.

%       minMajorAxis: Minimal length of major axis accepted.

%       maxMajorAxis: Maximal length of major axis accepted.

%       maxMajorAxis: Maximal length of major axis accepted.

%        rotation, rotationSpan: Specification of restriction on the angle of the major axis in degrees.

%        rotation, rotationSpan: Specification of restriction on the angle of the major axis in degrees.

%                                If rotationSpan is in (0,90), only angles within [rotation-rotationSpan,

%                                If rotationSpan is in (0,90), only angles within [rotation-rotationSpan,

%                               rotation+rotationSpan] are accepted.

%                               rotation+rotationSpan] are accepted.

%       minAspectRatio: Minimal aspect ratio of an ellipse (in (0,1))

%       minAspectRatio: Minimal aspect ratio of an ellipse (in (0,1))

%       randomize: Subsampling of all possible point pairs. Instead of examining all N*N pairs, runs

%       randomize: Subsampling of all possible point pairs. Instead of examining all N*N pairs, runs

%                  only on N*randomize pairs. If 0, randomization is turned off.

%                  only on N*randomize pairs. If 0, randomization is turned off.

%       numBest: Top numBest to return

%       numBest: Top numBest to return

%       uniformWeights: Used to prefer some points over others. If false, accumulator points are weighted 

%       uniformWeights: Used to prefer some points over others. If false, accumulator points are weighted 

%                       by their grey intensity in the image. If true, the input image is regarded as binary.

%                       by their grey intensity in the image. If true, the input image is regarded as binary.

%       smoothStddev: In order to provide more stability of the solution, the accumulator is convolved with

%       smoothStddev: In order to provide more stability of the solution, the accumulator is convolved with

%                     a gaussian kernel. This parameter specifies its standard deviation in pixels.

%                     a gaussian kernel. This parameter specifies its standard deviation in pixels.

%

%

% Return value:

% Return value:

% --------    

% --------    

% Returns a matrix of best fits. Each row (there are params.numBest of them) contains six elements:

% Returns a matrix of best fits. Each row (there are params.numBest of them) contains six elements:

% [x0 y0 a b alpha score] being the center of the ellipse, its major and minor axis, its angle in degrees and score.

% [x0 y0 a b alpha score] being the center of the ellipse, its major and minor axis, its angle in degrees and score.

%

%

% Based on:

% Based on:

% --------    

% --------    

% - "A New Efficient Ellipse Detection Method" (Yonghong Xie Qiang , Qiang Ji / 2002)

% - "A New Efficient Ellipse Detection Method" (Yonghong Xie Qiang , Qiang Ji / 2002)

% - random subsampling inspired by "Randomized Hough Transform for Ellipse Detection with Result Clustering"

% - random subsampling inspired by "Randomized Hough Transform for Ellipse Detection with Result Clustering"

%   (CA Basca, M Talos, R Brad / 2005)

%   (CA Basca, M Talos, R Brad / 2005)

%

%

% Update log:

% Update log:

% --------

% --------

% 1.1: More memory efficient code, better documentation, more parameters, more solutions possible, example code.

% 1.1: More memory efficient code, better documentation, more parameters, more solutions possible, example code.

% 1.0: Initial version

% 1.0: Initial version

%

%

%

%

% Author: Martin Simonovsky

% Author: Martin Simonovsky

% e-mail: <mys007@seznam.cz>

% e-mail: <mys007@seznam.cz>

% Release: 1.1

% Release: 1.1

% Release date: 25.7.2013

% Release date: 25.7.2013

%

%

%    

%    

% --------    

% --------    

%

%

% Redistribution and use in source and binary forms, with or without 

% Redistribution and use in source and binary forms, with or without 

% modification, are permitted provided that the following conditions are 

% modification, are permitted provided that the following conditions are 

% met:

% met:

% 

% 

%     * Redistributions of source code must retain the above copyright 

%     * Redistributions of source code must retain the above copyright 

%       notice, this list of conditions and the following disclaimer.

%       notice, this list of conditions and the following disclaimer.

%     * Redistributions in binary form must reproduce the above copyright 

%     * Redistributions in binary form must reproduce the above copyright 

%       notice, this list of conditions and the following disclaimer in 

%       notice, this list of conditions and the following disclaimer in 

%       the documentation and/or other materials provided with the distribution

%       the documentation and/or other materials provided with the distribution

%       

%       

% THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 

% THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 

% AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 

% AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 

% IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 

% IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 

% ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE 

% ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE 

% LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 

% LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 

% CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 

% CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 

% SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 

% SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 

% INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 

% INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 

% CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 

% CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 

% ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 

% ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 

% POSSIBILITY OF SUCH DAMAGE.

% POSSIBILITY OF SUCH DAMAGE.

    % default values

    % default values

    if nargin==1; params=[]; end

    if nargin==1; params=[]; end

    % - parameters to contrain the search

    % - parameters to contrain the search

    if ~isfield(params,'minMajorAxis');     params.minMajorAxis = 10; end

    if ~isfield(params,'minMajorAxis');     params.minMajorAxis = 10; end

    if ~isfield(params,'maxMajorAxis');     params.maxMajorAxis = 200; end

    if ~isfield(params,'maxMajorAxis');     params.maxMajorAxis = 200; end

    if ~isfield(params,'rotation');            params.rotation = 0; end

    if ~isfield(params,'rotation');            params.rotation = 0; end

    if ~isfield(params,'rotationSpan');        params.rotationSpan = 0; end

    if ~isfield(params,'rotationSpan');        params.rotationSpan = 0; end

    if ~isfield(params,'minAspectRatio');    params.minAspectRatio = 0.1; end

    if ~isfield(params,'minAspectRatio');    params.minAspectRatio = 0.1; end

    if ~isfield(params,'randomize');        params.randomize = 2; end

    if ~isfield(params,'randomize');        params.randomize = 2; end

    % - others

    % - others

    if ~isfield(params,'numBest');            params.numBest = 3; end

    if ~isfield(params,'numBest');            params.numBest = 3; end

    if ~isfield(params,'uniformWeights');   params.uniformWeights = true; end

    if ~isfield(params,'uniformWeights');   params.uniformWeights = true; end

    if ~isfield(params,'smoothStddev');        params.smoothStddev = 1; end

    if ~isfield(params,'smoothStddev');        params.smoothStddev = 1; end

    eps = 0.0001;

    eps = 0.0001;

    bestFits = zeros(params.numBest,6);

    bestFits = zeros(params.numBest,6);

    params.rotationSpan = min(params.rotationSpan, 90);    

    params.rotationSpan = min(params.rotationSpan, 90);    

    H = fspecial('gaussian', [params.smoothStddev*6 1], params.smoothStddev);

    H = fspecial('gaussian', [params.smoothStddev*6 1], params.smoothStddev);

    [Y,X]=find(img);

    [Y,X]=find(img);

    Y = single(Y); X = single(X);

    Y = single(Y); X = single(X);

    N = length(Y);

    N = length(Y);

    fprintf('Possible major axes: %d * %d = %d\n', N, N, N*N);

    fprintf('Possible major axes: %d * %d = %d\n', N, N, N*N);

    % compute pairwise distances between points (memory intensive!) and filter

    % compute pairwise distances between points (memory intensive!) and filter

    % TODO: do this block-wise, just appending the filtered results (I,J)

    % TODO: do this block-wise, just appending the filtered results (I,J)

    distsSq = bsxfun(@minus,X,X').^2 + bsxfun(@minus,Y,Y').^2;

    distsSq = bsxfun(@minus,X,X').^2 + bsxfun(@minus,Y,Y').^2;

    [I,J] = find(distsSq>=params.minMajorAxis^2 & distsSq<=params.maxMajorAxis^2);

    [I,J] = find(distsSq>=params.minMajorAxis^2 & distsSq<=params.maxMajorAxis^2);

    idx = I<J;

    idx = I<J;

    I = uint32(I(idx)); J = uint32(J(idx));

    I = uint32(I(idx)); J = uint32(J(idx));

    fprintf('..after distance constraint: %d\n', length(I));

    fprintf('..after distance constraint: %d\n', length(I));

    % compute pairwise angles and filter

    % compute pairwise angles and filter

    if params.rotationSpan>0

    if params.rotationSpan>0

        tangents = (Y(I)-Y(J)) ./ (X(I)-X(J));

        tangents = (Y(I)-Y(J)) ./ (X(I)-X(J));

        tanLo = tand(params.rotation-params.rotationSpan);

        tanLo = tand(params.rotation-params.rotationSpan);

        tanHi = tand(params.rotation+params.rotationSpan);    

        tanHi = tand(params.rotation+params.rotationSpan);    

        if tanLo<tanHi

        if tanLo<tanHi

            idx = tangents > tanLo & tangents < tanHi;

            idx = tangents > tanLo & tangents < tanHi;

        else

        else

            idx = tangents > tanLo | tangents < tanHi;

            idx = tangents > tanLo | tangents < tanHi;

        end

        end

        I = I(idx); J = J(idx);

        I = I(idx); J = J(idx);

        fprintf('..after angular constraint: %d\n', length(I));

        fprintf('..after angular constraint: %d\n', length(I));

    else

    else

        fprintf('..angular constraint not used\n');

        fprintf('..angular constraint not used\n');

    end

    end

    npairs = length(I);

    npairs = length(I);

    % compute random choice and filter

    % compute random choice and filter

    if params.randomize>0

    if params.randomize>0

        perm = randperm(npairs);

        perm = randperm(npairs);

        pairSubset = perm(1:min(npairs,N*params.randomize));

        pairSubset = perm(1:min(npairs,N*params.randomize));

        clear perm;

        clear perm;

        fprintf('..after randomization: %d\n', length(pairSubset));

        fprintf('..after randomization: %d\n', length(pairSubset));

    else

    else

        pairSubset = 1:npairs;

        pairSubset = 1:npairs;

    end

    end

    % check out all hypotheses

    % check out all hypotheses

    for p=pairSubset

    for p=pairSubset

        x1=X(I(p)); y1=Y(I(p));

        x1=X(I(p)); y1=Y(I(p));

        x2=X(J(p)); y2=Y(J(p));

        x2=X(J(p)); y2=Y(J(p));

        %compute center & major axis

        %compute center & major axis

        x0=(x1+x2)/2; y0=(y1+y2)/2;

        x0=(x1+x2)/2; y0=(y1+y2)/2;

        aSq = distsSq(I(p),J(p))/4;

        aSq = distsSq(I(p),J(p))/4;

        thirdPtDistsSq = (X-x0).^2 + (Y-y0).^2;

        thirdPtDistsSq = (X-x0).^2 + (Y-y0).^2;

        K = thirdPtDistsSq <= aSq; % (otherwise the formulae in paper do not work)

        K = thirdPtDistsSq <= aSq; % (otherwise the formulae in paper do not work)

        %get minor ax propositions for all other points

        %get minor ax propositions for all other points

        fSq = (X(K)-x2).^2 + (Y(K)-y2).^2;

        fSq = (X(K)-x2).^2 + (Y(K)-y2).^2;

        cosTau = (aSq + thirdPtDistsSq(K) - fSq) ./ (2*sqrt(aSq*thirdPtDistsSq(K)));

        cosTau = (aSq + thirdPtDistsSq(K) - fSq) ./ (2*sqrt(aSq*thirdPtDistsSq(K)));

        cosTau = min(1,max(-1,cosTau)); %inexact float arithmetic?!

        cosTau = min(1,max(-1,cosTau)); %inexact float arithmetic?!

        sinTauSq = 1 - cosTau.^2;

        sinTauSq = 1 - cosTau.^2;

        b = sqrt( (aSq * thirdPtDistsSq(K) .* sinTauSq) ./ (aSq - thirdPtDistsSq(K) .* cosTau.^2 + eps) );

        b = sqrt( (aSq * thirdPtDistsSq(K) .* sinTauSq) ./ (aSq - thirdPtDistsSq(K) .* cosTau.^2 + eps) );

        %proper bins for b

        %proper bins for b

        idxs = round(b)+1;

        idxs = round(b)+1;

        if params.uniformWeights

        if params.uniformWeights

            weights = 1;

            weights = 1;

        else

        else

            weights = img(sub2ind(size(img),Y(K),X(K)));

            weights = img(sub2ind(size(img),Y(K),X(K)));

        end

        end

        accumulator = accumarray(idxs, weights, [params.maxMajorAxis 1]);

        accumulator = accumarray(idxs, weights, [params.maxMajorAxis 1]);

        %a bit of smoothing and finding the most busy bin

        %a bit of smoothing and finding the most busy bin

        accumulator(1:ceil(sqrt(aSq)*params.minAspectRatio)) = 0;

        accumulator(1:ceil(sqrt(aSq)*params.minAspectRatio)) = 0;

        [score, idx] = max(accumulator);

        [score, idx] = max(accumulator);

        if (bestFits(end,end) < score)

        if (bestFits(end,end) < score)

            if params.numBest>1

            if params.numBest>1

                [~,si]=sort(bestFits(:,end),'descend');

                [~,si]=sort(bestFits(:,end),'descend');

                bestFits = bestFits(si,:);

                bestFits = bestFits(si,:);

            end

            end

        end

        end

    end

    end

end

end

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