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#ifndef log2f
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#ifndef log2f
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#define log2f(x) (log(x)/log(2.0))
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#define log2f(x) (log(x)/log(2.0))
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#endif
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#endif
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static unsigned int nLineShifts = 20; // number of columns over which each line is shifted
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static unsigned int nLineShifts = 8; // number of columns over which each line is shifted
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/*
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/*
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 * The purpose of this function is to convert an unsigned
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 * The purpose of this function is to convert an unsigned
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 * binary number to reflected binary Gray code.
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 * binary number to reflected binary Gray code.
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 *
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 *
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// Algorithm
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// Algorithm
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AlgorithmLineShift::AlgorithmLineShift(unsigned int _screenCols, unsigned int _screenRows) : Algorithm(_screenCols, _screenRows){
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AlgorithmLineShift::AlgorithmLineShift(unsigned int _screenCols, unsigned int _screenRows) : Algorithm(_screenCols, _screenRows){
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    int nTotalBits = ceilf(log2f((float)screenCols));
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    int nTotalBits = ceilf(log2f((float)screenCols));
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    // determine the necessary Gray code bits and add some robustness
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    nGrayBits = nTotalBits - floorf(log2f((float)nLineShifts));
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    nGrayBits = nTotalBits - floorf(log2f((float)nLineShifts)) + 2;
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    N = 2 + 2*nGrayBits + nLineShifts;
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    N = 2 + 2*nGrayBits + nLineShifts;
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    // all on pattern
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    // all on pattern
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    cv::Mat allOn(1, screenCols, CV_8UC3, cv::Scalar::all(255));
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    cv::Mat allOn(1, screenCols, CV_8UC3, cv::Scalar::all(255));
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void getlineCenters(const cv::Mat& linesScanLine, const cv::Mat& codeScanLine, std::vector<cv::Vec2f>& lineCenters){
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void getlineCenters(const cv::Mat& linesScanLine, const cv::Mat& codeScanLine, std::vector<cv::Vec2f>& lineCenters){
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    int nCols = linesScanLine.cols;
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    int nCols = linesScanLine.cols;
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    // fourth order derivative filtering
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    // finite derivative
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    cv::Mat der(1, nCols, CV_32F);
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    cv::Mat g(1, nCols, CV_32F);
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    cv::Mat h(1, nCols, CV_32F);
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    for(int i=2; i<nCols-2; i++)
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    for(int i=2; i<nCols-2; i++){
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        der.at<float>(0, i) = linesScanLine.at<unsigned char>(0, i-2)+linesScanLine.at<unsigned char>(0, i-1)-
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//        g.at<float>(0, i) = linesScanLine.at<unsigned char>(0, i+2)+linesScanLine.at<unsigned char>(0, i+1)-
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                              linesScanLine.at<unsigned char>(0, i+1)-linesScanLine.at<unsigned char>(0, i+2);
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//                            linesScanLine.at<unsigned char>(0, i-1)-linesScanLine.at<unsigned char>(0, i-2);
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        g.at<float>(0, i) = 1.0*linesScanLine.at<unsigned char>(0, i+2)+8.0*linesScanLine.at<unsigned char>(0, i+1)-
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                            8.0*linesScanLine.at<unsigned char>(0, i-1)-1.0*linesScanLine.at<unsigned char>(0, i-2);
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        h.at<float>(0, i) = -1.0*linesScanLine.at<unsigned char>(0, i+2)+16.0*linesScanLine.at<unsigned char>(0, i+1)-
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                            30.0*linesScanLine.at<unsigned char>(0, i)+
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                            16.0*linesScanLine.at<unsigned char>(0, i-1)-1.0*linesScanLine.at<unsigned char>(0, i-2);
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    }
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//    cvtools::writeMat(codeScanLine, "codeScanLine.mat", "codeScanLine");
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//    cvtools::writeMat(codeScanLine, "codeScanLine.mat", "codeScanLine");
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//    cvtools::writeMat(linesScanLine, "linesScanLine.mat", "linesScanLine");
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//    cvtools::writeMat(linesScanLine, "linesScanLine.mat", "linesScanLine");
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//    cvtools::writeMat(der, "der.mat", "der");
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//    cvtools::writeMat(der, "der.mat", "der");
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    for(int i=0; i<nCols; i++){
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    for(int i=0; i<nCols-1; i++){
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//        float fLeft = linesScanLine.at<unsigned char>(0, i-1);
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        int code = codeScanLine.at<int>(0, i);
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        float fI = linesScanLine.at<unsigned char>(0, i);
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//        float fRight = linesScanLine.at<unsigned char>(0, i+1);
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        float gI = g.at<float>(0, i);
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        float gRight = g.at<float>(0, i+1);
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        float hI = h.at<float>(0, i);
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        int codeI = codeScanLine.at<int>(0, i);
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        if((code != -1) && (der.at<float>(0, i) < 0.0) && (der.at<float>(0, i+1) > 0.0) && ((der.at<float>(0, i+1) - der.at<float>(0, i)) > 20.0)){
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        //int codeRight = codeScanLine.at<int>(0, i+1);
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        if((codeI != -1) && (fI > 1) && (gI >= 0.0) && (gRight <= 0.0) && (gRight < gI) && (hI < -2.0)){
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            lineCenters.push_back(cv::Vec2f(i, code));
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            float delta = gI/(gI - gRight);
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            // TODO: subpixel interpolation, non-max suppression
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            lineCenters.push_back(cv::Vec2f(i + delta, codeI));
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        }
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        }
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    }
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    }
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}
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}
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    // erode occlusion masks
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    // erode occlusion masks
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    cv::Mat strel = cv::getStructuringElement(cv::MORPH_ELLIPSE, cv::Size(2,2));
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    cv::Mat strel = cv::getStructuringElement(cv::MORPH_ELLIPSE, cv::Size(2,2));
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    cv::erode(occlusion0Rect, occlusion0Rect, strel);
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    cv::erode(occlusion0Rect, occlusion0Rect, strel);
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    cv::erode(occlusion1Rect, occlusion1Rect, strel);
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    cv::erode(occlusion1Rect, occlusion1Rect, strel);
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    // correct for texture modulation and ambient
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//    // correct for texture modulation and ambient
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    cv::Mat A0 = frames0Rect[1];
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//    cv::Mat A0 = frames0Rect[1];
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    cv::Mat M0 = frames0Rect[0]-frames0Rect[1];
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//    cv::Mat M0 = frames0Rect[0]-frames0Rect[1];
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    cv::divide(256.0, M0, M0, CV_32F);
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//    cv::divide(256.0, M0, M0, CV_32F);
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    cv::Mat A1 = frames1Rect[1];
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//    cv::Mat A1 = frames1Rect[1];
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    cv::Mat M1 = frames1Rect[0]-frames1Rect[1];
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//    cv::Mat M1 = frames1Rect[0]-frames1Rect[1];
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    cv::divide(256.0, M1, M1, CV_32F);
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//    cv::divide(256.0, M1, M1, CV_32F);
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    for(int i=2; i<N; i++){
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//    for(int i=2; i<N; i++){
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        cv::multiply(frames0Rect[i]-A0, M0, frames0Rect[i], 1.0, CV_8UC1);
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//        cv::multiply(frames0Rect[i]-A0, M0, frames0Rect[i], 1.0, CV_8UC1);
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        cv::multiply(frames1Rect[i]-A1, M1, frames1Rect[i], 1.0, CV_8UC1);
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//        cv::multiply(frames1Rect[i]-A1, M1, frames1Rect[i], 1.0, CV_8UC1);
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    }
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//    }
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    //cvtools::writeMat(frames0Rect[22], "frames0Rect_22.mat", "frames0Rect_22");
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    //cvtools::writeMat(frames0Rect[22], "frames0Rect_22.mat", "frames0Rect_22");
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    //cvtools::writeMat(frames0Rect[23], "frames0Rect_23.mat", "frames0Rect_23");
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    //cvtools::writeMat(frames0Rect[23], "frames0Rect_23.mat", "frames0Rect_23");
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    // divide into Gray coding frames and line shift frames
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    // divide into Gray coding frames and line shift frames
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            // sorted, unique line centers
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            // sorted, unique line centers
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            getlineCenters(lines0.row(row), code0Binary.row(row), lineCenters0);
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            getlineCenters(lines0.row(row), code0Binary.row(row), lineCenters0);
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            getlineCenters(lines1.row(row), code1Binary.row(row), lineCenters1);
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            getlineCenters(lines1.row(row), code1Binary.row(row), lineCenters1);
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//         if(s==0 && row==1300){
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         if(s==0 && row==1300){
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//            std::cout << cv::Mat(lineCenters0) << std::endl;
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            std::cout << cv::Mat(lineCenters0) << std::endl;
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//            std::cout << cv::Mat(lineCenters1) << std::endl;
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            std::cout << cv::Mat(lineCenters1) << std::endl;
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//            cvtools::writeMat(lines0.row(row), "lines0.mat", "lines0");
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            cvtools::writeMat(lines0.row(row), "lines0.mat", "lines0");
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//            cvtools::writeMat(lines1.row(row), "lines1.mat", "lines1");
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            cvtools::writeMat(lines1.row(row), "lines1.mat", "lines1");
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//            cvtools::writeMat(code0Binary.row(row), "code0Binary.mat", "code0Binary");
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            cvtools::writeMat(code0Binary.row(row), "code0Binary.mat", "code0Binary");
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//            cvtools::writeMat(code1Binary.row(row), "code1Binary.mat", "code1Binary");
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            cvtools::writeMat(code1Binary.row(row), "code1Binary.mat", "code1Binary");
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//         }
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         }
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            // match and store
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            // match and store
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            int i=0, j=0;
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            int i=0, j=0;
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            while(i<lineCenters0.size() && j<lineCenters1.size()){
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            while(i<lineCenters0.size() && j<lineCenters1.size()){
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