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// amplitude remaps
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// amplitude remaps
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cv::Mat amplitude0Rect, amplitude1Rect;
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cv::Mat amplitude0Rect, amplitude1Rect;
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cv::remap(amplitude0, amplitude0Rect, map0X, map0Y, CV_INTER_LINEAR);
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cv::remap(amplitude0, amplitude0Rect, map0X, map0Y, CV_INTER_LINEAR);
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cv::remap(amplitude1, amplitude1Rect, map1X, map1Y, CV_INTER_LINEAR);
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cv::remap(amplitude1, amplitude1Rect, map1X, map1Y, CV_INTER_LINEAR);
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cvtools::writeMat(up0Rect, "up0Rect.mat", "up0Rect");
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cvtools::writeMat(amplitude0Rect, "amplitude0Rect.mat", "amplitude0Rect");
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cvtools::writeMat(up1Rect, "up1Rect.mat", "up1Rect");
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cvtools::writeMat(amplitude1Rect, "amplitude1Rect.mat", "amplitude1Rect");
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// color debayer and remap
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// color debayer and remap
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cv::Mat color0Rect, color1Rect;
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cv::Mat color0Rect, color1Rect;
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// frames0[0].convertTo(color0Rect, CV_8UC1, 1.0/256.0);
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// frames0[0].convertTo(color0Rect, CV_8UC1, 1.0/256.0);
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cv::cvtColor(frames0[0], color0Rect, CV_BayerBG2RGB);
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cv::cvtColor(frames0[0], color0Rect, CV_BayerBG2RGB);
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cv::remap(frames1Gray[1], frames1OffRect, map1X, map1Y, CV_INTER_LINEAR);
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cv::remap(frames1Gray[1], frames1OffRect, map1X, map1Y, CV_INTER_LINEAR);
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// Occlusion masks
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// Occlusion masks
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cv::Mat occlusion0Rect, occlusion1Rect;
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cv::Mat occlusion0Rect, occlusion1Rect;
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cv::subtract(frames0OnRect, frames0OffRect, occlusion0Rect);
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cv::subtract(frames0OnRect, frames0OffRect, occlusion0Rect);
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occlusion0Rect = (occlusion0Rect > 25) & (occlusion0Rect < 250);
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occlusion0Rect = (occlusion0Rect > 35) & (occlusion0Rect < 250);
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cv::subtract(frames1OnRect, frames1OffRect, occlusion1Rect);
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cv::subtract(frames1OnRect, frames1OffRect, occlusion1Rect);
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occlusion1Rect = (occlusion1Rect > 25) & (occlusion1Rect < 250);
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occlusion1Rect = (occlusion1Rect > 35) & (occlusion1Rect < 250);
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// // Threshold on energy at primary frequency
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// // Threshold on energy at primary frequency
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// occlusion0Rect = occlusion0Rect & (amplitude0Rect > 5.0*nStepsPrimary);
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// occlusion0Rect = occlusion0Rect & (amplitude0Rect > 5.0*nStepsPrimary);
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// occlusion1Rect = occlusion1Rect & (amplitude1Rect > 5.0*nStepsPrimary);
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// occlusion1Rect = occlusion1Rect & (amplitude1Rect > 5.0*nStepsPrimary);
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